Protein Info for CCNA_01206 in Caulobacter crescentus NA1000

Annotation: ABC transporter permease protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 245 transmembrane" amino acids 24 to 43 (20 residues), see Phobius details amino acids 55 to 77 (23 residues), see Phobius details amino acids 101 to 122 (22 residues), see Phobius details amino acids 133 to 155 (23 residues), see Phobius details amino acids 161 to 182 (22 residues), see Phobius details amino acids 190 to 209 (20 residues), see Phobius details amino acids 221 to 240 (20 residues), see Phobius details PF01061: ABC2_membrane" amino acids 12 to 202 (191 residues), 47.6 bits, see alignment E=1.5e-16 PF12698: ABC2_membrane_3" amino acids 45 to 236 (192 residues), 41.6 bits, see alignment E=9.2e-15

Best Hits

KEGG orthology group: K01992, ABC-2 type transport system permease protein (inferred from 100% identity to ccr:CC_1148)

Predicted SEED Role

"ABC transporter permease protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H3C8W6 at UniProt or InterPro

Protein Sequence (245 amino acids)

>CCNA_01206 ABC transporter permease protein (Caulobacter crescentus NA1000)
MHTLAVYLREARAQVLATWRTPQFMVPSVILPLLFYGVMGLGLSKGREEIAHMMLANYVI
FAAIAPAMFGFGAGVAAEREAKLVELKQIAPLPAGGYLTGRLATALALIAAAIALLGGLA
YIGGVRMEPGQWAATLGLGLGSTIPFALIGLNLGLRMGSQGATALANLVFLGFSLFGGLW
IPLQAMPAWFGKIAVFMPSYHLGQLSQMFSGMQPFADVERHVAILAAMTLAALIGAVMAW
RRQDA