Protein Info for CCNA_01152 in Caulobacter crescentus NA1000

Annotation: external DNA uptake/catabolism protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 273 PF04378: RsmJ" amino acids 33 to 272 (240 residues), 326.6 bits, see alignment E=4.3e-102

Best Hits

KEGG orthology group: K07115, (no description) (inferred from 100% identity to ccr:CC_1096)

Predicted SEED Role

"Protein involved in catabolism of external DNA"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H3C6L3 at UniProt or InterPro

Protein Sequence (273 amino acids)

>CCNA_01152 external DNA uptake/catabolism protein (Caulobacter crescentus NA1000)
MNYRHAFHAGNFADLHKHAILLAMLSALQEKSPALAVIDTHAGAGGYDLAGEMARRSGEA
QAGIFRLKAAADAPAVFQPLLNAITQMNGGKDGDLYPGSPRLMARALRGADRYVGCELRD
DDADLLRKTLAPCANARALQADGFDTAVKDAGKGGRAFIVIDPPFERPDDYDRIVATTRA
VLARAPDAALAIWLPIKDLETFDAFLRAMETVTSDLLVAELRLRPLTDPMKMNGCAMVMI
GAPPSVEDAAVAAGDWIATRLGEPGGRSRVWRT