Protein Info for CCNA_01104 in Caulobacter crescentus NA1000

Annotation: glycosyltransferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 390 PF13579: Glyco_trans_4_4" amino acids 20 to 170 (151 residues), 66.1 bits, see alignment E=1.2e-21 PF13439: Glyco_transf_4" amino acids 20 to 175 (156 residues), 105.9 bits, see alignment E=6.1e-34 PF13477: Glyco_trans_4_2" amino acids 26 to 126 (101 residues), 25.4 bits, see alignment E=3.8e-09 PF00534: Glycos_transf_1" amino acids 197 to 360 (164 residues), 103.8 bits, see alignment E=2e-33 PF13692: Glyco_trans_1_4" amino acids 203 to 345 (143 residues), 94.3 bits, see alignment E=2.1e-30

Best Hits

KEGG orthology group: None (inferred from 100% identity to ccs:CCNA_01104)

Predicted SEED Role

"Glycosyltransferase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H3C8N1 at UniProt or InterPro

Protein Sequence (390 amino acids)

>CCNA_01104 glycosyltransferase (Caulobacter crescentus NA1000)
MPDLPAHFTLLQVTPELETGGAEQTTIDVAHAVVAQGGKALVATRGGRMATRLEADGGRL
AQMPAQSKNPLVMLGNAARLIDLIRREKVSLVHARSRAPAFSALWAAHATKVPFVATYHG
VYNAKSGLKRWYNAVMTKGAVVIANSEYTREHVIREHGVAADKVVAIPRGVDLSRFEPDV
VSADRIEALRQAWGVAPDERRLKVLLAGRLTRWKGQGLLVQAMALLKARGEDKVLLLLAG
DDQGRKGYRAELAAAIAQAGLEDAVKLVGHCDDMPAAYLLADLAIAPSLEPEAFGRTAVE
PQVMGRPVMAADHGATRETVLPGETGWLVTPGDAEAWAAALLEAIDIGASGRQSMGRTAR
VRARRLYSVDAMCEATLKVYAQVLGLERSS