Protein Info for CCNA_00677 in Caulobacter crescentus NA1000

Annotation: LSU ribosomal protein L1P

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 229 TIGR01169: ribosomal protein uL1" amino acids 14 to 226 (213 residues), 317 bits, see alignment E=3.1e-99 PF00687: Ribosomal_L1" amino acids 28 to 218 (191 residues), 234.8 bits, see alignment E=3.4e-74

Best Hits

Swiss-Prot: 100% identical to RL1_CAUVN: 50S ribosomal protein L1 (rplA) from Caulobacter vibrioides (strain NA1000 / CB15N)

KEGG orthology group: K02863, large subunit ribosomal protein L1 (inferred from 100% identity to ccs:CCNA_00677)

MetaCyc: 54% identical to 50S ribosomal subunit protein L1 (Escherichia coli K-12 substr. MG1655)

Predicted SEED Role

"LSU ribosomal protein L1p (L10Ae)" in subsystem Ribosome LSU bacterial

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B8H0P3 at UniProt or InterPro

Protein Sequence (229 amino acids)

>CCNA_00677 LSU ribosomal protein L1P (Caulobacter crescentus NA1000)
MAKQPKRITAWTGDRDAAHSVEAAIALVKANAKAKFDETIEISVNLGVDPRHADQQVRGV
VNLPSGTGRDVRVAVFAKDAKAAEATAAGAEHVGADDLYEKIAGGFMDFDRVIATPDMMA
LVGRLGKVLGPRGLMPNPKVGTVTPNVAQAVKDAKGGAVEFRVEKAGIVHAGIGKASFTD
EALAINVKALIEALNRSKPSGAKGVFIKRVGLSSTMGPGFKVDISSIGA