Protein Info for CCNA_00649 in Caulobacter crescentus NA1000

Annotation: ABC family transporter protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 364 PF13379: NMT1_2" amino acids 8 to 244 (237 residues), 227 bits, see alignment E=1.8e-71

Best Hits

KEGG orthology group: K02049, sulfonate/nitrate/taurine transport system ATP-binding protein (inferred from 100% identity to ccs:CCNA_00649)

Predicted SEED Role

"Nitrate ABC transporter, nitrate-binding protein" in subsystem Nitrate and nitrite ammonification

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H3C595 at UniProt or InterPro

Protein Sequence (364 amino acids)

>CCNA_00649 ABC family transporter protein (Caulobacter crescentus NA1000)
MRAAGRRQDHGLLRRGGLEVELSREVSWATVRDKVAVGALDGAHMLAPMALAATGAGEAD
IIAPMALNRNGSAITVSRALSGALHAADPASPDAPATAAGLAGEVEARRVRGEPPLTFAV
VFPYSMHNYFLRYWLAQGGVDPDKDVRIVVIPPPRMVEQMRAGAVDGFCVGAPWNAVAEA
EGVGEILITASRFWPSGPDKVLGVAARFASTRPDDLKACLRAVMRAAAWADAPQNHEGLV
ELLARPEWVGAAPAAIARALKTEIVFHRDGAGLPRLEHGLWFASQMVRWGQVEADADLDA
LVTRVYRPDLYRAAALSLDPILDPALSFEDAATPDVARLFDQRPFDPAAPLAYASSFAIG
RLRD