Protein Info for CCNA_00614 in Caulobacter crescentus NA1000

Annotation: short-chain fatty acids transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 495 transmembrane" amino acids 21 to 40 (20 residues), see Phobius details amino acids 93 to 114 (22 residues), see Phobius details amino acids 136 to 156 (21 residues), see Phobius details amino acids 160 to 176 (17 residues), see Phobius details amino acids 183 to 205 (23 residues), see Phobius details amino acids 220 to 240 (21 residues), see Phobius details amino acids 276 to 294 (19 residues), see Phobius details amino acids 300 to 321 (22 residues), see Phobius details amino acids 342 to 361 (20 residues), see Phobius details amino acids 372 to 394 (23 residues), see Phobius details amino acids 399 to 421 (23 residues), see Phobius details amino acids 442 to 463 (22 residues), see Phobius details amino acids 471 to 493 (23 residues), see Phobius details PF03606: DcuC" amino acids 18 to 490 (473 residues), 496.8 bits, see alignment E=5.3e-153 PF03806: ABG_transport" amino acids 306 to 451 (146 residues), 28 bits, see alignment E=7e-11

Best Hits

KEGG orthology group: None (inferred from 100% identity to ccr:CC_0578)

Predicted SEED Role

"Arginine/ornithine antiporter ArcD" in subsystem Arginine Deiminase Pathway or Arginine and Ornithine Degradation or Polyamine Metabolism

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H3C552 at UniProt or InterPro

Protein Sequence (495 amino acids)

>CCNA_00614 short-chain fatty acids transporter (Caulobacter crescentus NA1000)
MSSPTSDPPKGAPGKSKLPDTFLILLFLALAAFVSTWIFTPGRYALSAKGRIDPTSFEAG
AAPLRAPLFGQDGAVGFLNVPFEGLVAGDRSSTTVGLMAFILVIGGVFGVLMRTGSIDRV
LTALIGPPDKLGTVRGDLMVMGLFVAFSLAGAVFGMSEEAIAISLILTPILVRSGYDSIT
GMLTCYVATQVGFATSWMNPFGLVIAQSISGLPTLSGMSLRLVMWVVFTLVGVAYLGWYA
RRVRRDPTLSVAFQSDARWRDTASVVDSTAFRKGDLVVLALLLATVIWVAWGVIAKGYYL
AEIAAQFFAMGLAVGLIAYVLKLGQSGANDLVRAFGEGAAQLAPAALVVGIAKGVLLMIG
GDKPDHWSLLNSLLHAMGGLTALLPDWATALGMLGFQSAINLVIVSGSGQAALTMPLMAP
LADIAGVSRQTAVLAFQLGDGLTNIVAPTSAALMGCLAAGRLGFSTWITFVWRPLAGLLL
LAAAFILIAQGLGYQ