Protein Info for CCNA_00419 in Caulobacter crescentus NA1000

Annotation: fasciclin domain cell surface protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 178 signal peptide" amino acids 1 to 26 (26 residues), see Phobius details PF02469: Fasciclin" amino acids 43 to 177 (135 residues), 120.6 bits, see alignment E=2.4e-39

Best Hits

KEGG orthology group: None (inferred from 100% identity to ccr:CC_0414)

Predicted SEED Role

"Secreted and surface protein containing fasciclin-like repeats"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H3C6U7 at UniProt or InterPro

Protein Sequence (178 amino acids)

>CCNA_00419 fasciclin domain cell surface protein (Caulobacter crescentus NA1000)
MMRSMQRRAAVLALAAAAVAGPALAEHHGAKQNIVGVAAGNADFSTLVTAVTAADLVGTL
SGAGPFTVFAPTNAAFAKLPPGTVQTLVKPENKATLSKILTCHVVAGKVTAKTLTDAIQK
HGGSYTINTVGGCQFKAAISGGKVVITDEKGGKSAVTATDVAASNGVIHVIDSVLMPR