Protein Info for CCNA_00352 in Caulobacter crescentus NA1000

Annotation: integral membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 265 transmembrane" amino acids 12 to 38 (27 residues), see Phobius details amino acids 58 to 80 (23 residues), see Phobius details amino acids 100 to 119 (20 residues), see Phobius details amino acids 140 to 163 (24 residues), see Phobius details amino acids 175 to 194 (20 residues), see Phobius details amino acids 206 to 228 (23 residues), see Phobius details amino acids 234 to 253 (20 residues), see Phobius details PF03741: TerC" amino acids 18 to 225 (208 residues), 159.2 bits, see alignment E=4.8e-51

Best Hits

KEGG orthology group: None (inferred from 100% identity to ccr:CC_0347)

Predicted SEED Role

"Integral membrane protein TerC"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H3C4C4 at UniProt or InterPro

Protein Sequence (265 amino acids)

>CCNA_00352 integral membrane protein (Caulobacter crescentus NA1000)
MNEILSLAVDPAAWAALITLIVMEVVLGIDNLIFISILSNKLPEEHRQRVRRIGISLALI
MRLVLLSTIAFIVGLTAPVFDLGISGPVGAHGEPGFETAFSWRDLILIAGGVFLIWKATK
EIHHAVDPAKSDDVLEKDKATVVINNVGSAIFQIILLDLVFSIDSILTAVGMTEHLPIMV
IAVLVAVTVMLLAADPLANFINNNPTVVMLALGFLLMIGTVLIAEGFGGHVPKGYIYTAM
AFSAGVEGLNMMARKRDAKKQEQQT