Protein Info for CCNA_00164 in Caulobacter crescentus NA1000

Annotation: O-antigen polymerase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 641 transmembrane" amino acids 27 to 46 (20 residues), see Phobius details amino acids 52 to 73 (22 residues), see Phobius details amino acids 85 to 104 (20 residues), see Phobius details amino acids 129 to 147 (19 residues), see Phobius details amino acids 158 to 177 (20 residues), see Phobius details amino acids 196 to 216 (21 residues), see Phobius details amino acids 228 to 248 (21 residues), see Phobius details amino acids 254 to 272 (19 residues), see Phobius details amino acids 279 to 298 (20 residues), see Phobius details amino acids 374 to 394 (21 residues), see Phobius details amino acids 405 to 422 (18 residues), see Phobius details amino acids 429 to 447 (19 residues), see Phobius details amino acids 459 to 480 (22 residues), see Phobius details PF04932: Wzy_C" amino acids 238 to 381 (144 residues), 68.1 bits, see alignment E=3.8e-23

Best Hits

KEGG orthology group: None (inferred from 100% identity to ccs:CCNA_00164)

Predicted SEED Role

"FIG00483650: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H3C5B6 at UniProt or InterPro

Protein Sequence (641 amino acids)

>CCNA_00164 O-antigen polymerase (Caulobacter crescentus NA1000)
MRTSKRLGAGSSSFGSSGSRRLKVSEGVAIGALLTLILAEIIAFGASELAVSSAFAALHA
LFPIVLLATCGWARNAARQGVSPTLWLPFAILMLVTAWALTPFGPGGPHPVWLYVEPNGG
AITVDRSSLILNLVRLGGLACLFLAAQIIGSSETRRRALFWSLLVALGAYAILAILQHVG
VRASERMTATLLSPNTLATLMGVGAVFAAMFVTQFIQRAGGRLSLDKLPLDAGISLALLA
VFAVALAFTGSRGGVFATVVALAIFLIWQVLAQGKRARVVVMIGGAAVLLAAVGLAMRSA
DITAARLENLDGDVATRQTIFAAHWQAFKASPWFGYGLGSFPAVNQMVMTSETLPALFDV
RATHNLYLQWLEEAGLVGALSMLGLLGVLLWQVCAAANKPGTSGALARAAIASTALVLLH
GMSDFAVQAPALQALFAVGLGALVTSSPARRGRLPTFSATPTFAGVVLVSGLLVSAPLVA
ARFGGDLSALPTAPAEALASSVETGLAIGATDQATLDRLDALSRREVAMRPGVGAAWLRK
AAVDFKRGDFARANEALDRSYTVAPLHTSAFQARTRLAYEHWSRLTPAVRKQVIYQVRVE
YKRPGGDQRLTALANSIQDPSGRIGLALLIVAERMTKTADQ