Protein Info for CCNA_00136 in Caulobacter crescentus NA1000

Annotation: AmpG protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 559 transmembrane" amino acids 26 to 49 (24 residues), see Phobius details amino acids 55 to 76 (22 residues), see Phobius details amino acids 97 to 116 (20 residues), see Phobius details amino acids 122 to 143 (22 residues), see Phobius details amino acids 163 to 182 (20 residues), see Phobius details amino acids 188 to 208 (21 residues), see Phobius details amino acids 235 to 254 (20 residues), see Phobius details amino acids 280 to 302 (23 residues), see Phobius details amino acids 323 to 344 (22 residues), see Phobius details amino acids 371 to 389 (19 residues), see Phobius details amino acids 396 to 417 (22 residues), see Phobius details amino acids 423 to 445 (23 residues), see Phobius details amino acids 452 to 469 (18 residues), see Phobius details amino acids 526 to 549 (24 residues), see Phobius details PF13000: Acatn" amino acids 30 to 116 (87 residues), 37.4 bits, see alignment E=1.2e-13 PF07690: MFS_1" amino acids 31 to 259 (229 residues), 49.5 bits, see alignment E=3.2e-17

Best Hits

KEGG orthology group: K08218, MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG (inferred from 100% identity to ccs:CCNA_00136)

Predicted SEED Role

"AmpG permease"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H3C4J9 at UniProt or InterPro

Protein Sequence (559 amino acids)

>CCNA_00136 AmpG protein (Caulobacter crescentus NA1000)
MSEEAKAPEKKSLLQTLAFFGERRSLVMLGLGFASGLPFMLIFDTLSLWLRDAGLSLAVI
GFFSLATLSFSFKFLWAPLIDRTTVPVLHKLLGHRRAWMLVFQTVMVLGLWAISTMNPLN
QLGFLAAAAVTVGFATASHDIVIDAWRIEVADKEEQGPMVVAYQWGYRVAMIVAGAGPLL
LAERFGWNLSYAVMGLVVGLGVLATLCAPREAEHTIRPIPTDDVKQPKALEVTEWLLRLA
ILLLGALALGSGLSGDATLLSKLVGGEALAEAWTAKPNGIWLQLVGVITGLAIVVVAAWP
IPKVRTKPGVYMSKAFGEPLGEFLTRFHGVAGLILAAICVYRVSDFVLNIMNPFYRDMGF
TLTEIAEIRKVFGIIASMAGVFLGGVIVARLGLIKALVIGAFAQPISNLMFALLAMSGHN
TGMLFASICLDNIAGGIAGTALIAYMSSLTSAGFTATQYALFSSLYALPGKLIASQSGRI
VEASAKAAEAGGFTAPLKGLFTRLPPESFTAAGAKLGVSAPALAAGYTAFFLYTALIGVV
AIVLSFMVAARQGKTLAAS