Protein Info for CCNA_00110 in Caulobacter crescentus NA1000

Annotation: DNA-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 168 PF04073: tRNA_edit" amino acids 23 to 148 (126 residues), 100.2 bits, see alignment E=4.5e-33

Best Hits

Swiss-Prot: 37% identical to PRXD1_MOUSE: Prolyl-tRNA synthetase associated domain-containing protein 1 (Prorsd1) from Mus musculus

KEGG orthology group: None (inferred from 100% identity to ccr:CC_0111)

Predicted SEED Role

"FIG042921: similarity to aminoacyl-tRNA editing enzymes YbaK, ProX"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H3C2S2 at UniProt or InterPro

Protein Sequence (168 amino acids)

>CCNA_00110 DNA-binding protein (Caulobacter crescentus NA1000)
MKTRADLFAFFDAHGVDHKTLDHPPVFRVEEGLEIKAAMPGGHTKNLFLKDAKGQLWLIS
ALGETTIDLKKLHHVIGSGRLSFGPQEMMLETLGVTPGSVTAFGLINDTEKRVRFVLDKA
LADSDPVNFHPLKNDATTAVSQAGLRRFLAALGVEPMIVDFAAMEVVG