Protein Info for CCNA_00044 in Caulobacter crescentus NA1000

Annotation: ribosome maturation protein RimP

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 191 PF02576: RimP_N" amino acids 14 to 93 (80 residues), 79.1 bits, see alignment E=2.6e-26 PF17384: DUF150_C" amino acids 96 to 163 (68 residues), 44.5 bits, see alignment E=1.4e-15

Best Hits

Swiss-Prot: 100% identical to RIMP_CAUVN: Ribosome maturation factor RimP (rimP) from Caulobacter vibrioides (strain NA1000 / CB15N)

KEGG orthology group: K09748, ribosome maturation factor RimP (inferred from 100% identity to ccs:CCNA_00044)

Predicted SEED Role

"FIG000325: clustered with transcription termination protein NusA"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B8GX01 at UniProt or InterPro

Protein Sequence (191 amino acids)

>CCNA_00044 ribosome maturation protein RimP (Caulobacter crescentus NA1000)
MRGKTQEDRDLIEMLDPVAESLGYEIVRLRLMGGTEQRRLQIMAEHPLLEDGSGGDMNVE
DCAKLSRAVSEVLDAADPIAGEYTLEVSSPGIDRPLTRLKDFDDYAGLEARIELDRVAEG
RKRFKGELAGVEDDQVGLNIEGEDDVTVYFPFAWVIDAKLVMTDALMERGAKQRAARLES
DNEDLSESEED