Protein Info for CA265_RS25165 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: glycosyl transferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 544 transmembrane" amino acids 9 to 28 (20 residues), see Phobius details amino acids 69 to 100 (32 residues), see Phobius details amino acids 112 to 130 (19 residues), see Phobius details amino acids 164 to 192 (29 residues), see Phobius details amino acids 204 to 223 (20 residues), see Phobius details amino acids 269 to 293 (25 residues), see Phobius details amino acids 303 to 321 (19 residues), see Phobius details amino acids 327 to 345 (19 residues), see Phobius details amino acids 356 to 376 (21 residues), see Phobius details amino acids 382 to 400 (19 residues), see Phobius details amino acids 407 to 428 (22 residues), see Phobius details PF13231: PMT_2" amino acids 61 to 220 (160 residues), 61.6 bits, see alignment E=5.7e-21

Best Hits

KEGG orthology group: None (inferred from 55% identity to shg:Sph21_2823)

Predicted SEED Role

"FIG01100235: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9ZC14 at UniProt or InterPro

Protein Sequence (544 amino acids)

>CA265_RS25165 glycosyl transferase (Pedobacter sp. GW460-11-11-14-LB5)
MNPKDTRLYKILIALIVAVSTLALFGGVMEPDSALYASIAKNMVLRNDWVNIYVRGADWL
DKPHLTFWLAAASFKIFGITAFAYKLPSFLFGLWGAWYVYKLAKDIYSEKTGLMSALIFL
SSLHILISTFDVRAEVYITTFTLAAIYHYYKAHQSTFWHIVAGSFFAACAIMIKGIFVLI
PVFGGFIIYWLLTRQFKQLLKLKWWLAIILIFIFIIPELYTLYVQFDLHPEKVVFGKTGV
SGLKFFFWDSQFGRFFNNGPIKGKGDISFFLHTTLWAFLPWSVLFYAAVVNLFKKKNRID
LPAESIMIWTSAAITFLLFSLSKFQLPHYILIILPQFAIITALYLQKLEGNALKVFWYTQ
GVILLILLVCLIGIGYYSGFNFGYYIIAFPLVGSILGIFRKIGLQSLIIRSVVVAATIMI
FLSAFFYPSVLKYESGMQAGIWLKENYPKAKAAVLMYPDAYSFDFYANGEPKYFWSYEDL
NQSKDEKDLIIYTPASELGRLKTEYHAEVLKSFEYYHITKLTGKFINAKTRPQVLEQFYL
VKIH