Protein Info for CA265_RS24190 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 446 signal peptide" amino acids 1 to 26 (26 residues), see Phobius details PF02321: OEP" amino acids 31 to 226 (196 residues), 86.1 bits, see alignment E=1.4e-28 amino acids 255 to 436 (182 residues), 98.1 bits, see alignment E=2.9e-32

Best Hits

KEGG orthology group: K03287, outer membrane factor, OMF family (inferred from 81% identity to phe:Phep_3706)

Predicted SEED Role

"Cobalt-zinc-cadmium resistance protein CzcA; Cation efflux system protein CusA"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9ZCQ5 at UniProt or InterPro

Protein Sequence (446 amino acids)

>CA265_RS24190 transporter (Pedobacter sp. GW460-11-11-14-LB5)
MLRVKMVKLMLILIIGSALPQLVVAQQQVTLKDALTYALQNNNKVRKAKLDIEGGRYKVE
EVRAQALPQITGTVGLTYNPIIGQLVANFGGQTQAIKLGQNWNSSAGVQLSQQLFNQQVF
TGLQAARSSEEYYNLTSQLTEEQIIELVANNYYQVLVNRQQLNVIDTNIKNVKIVEKIVS
NQYKNGLARKIDVDRIMVNLTNLNTQREQVINAITQLENQLKFSMGMSVATQINLPATEL
TEVTTLPVFTDSIDLANRTEVKLLNNQDKLLSLQRKAYVAEYYPSLALTGNYTYSSQSDS
FDFLKSNAAAIGYGASAVGLTLRVPIFNGFLTRSKIRQADVDIKKAKEDRRESVNALNLA
YENAKIQLRNNLNTIKSQRKNADLAQEIYKSTQNNYNNGLASLTDLLDTENALTSAQNSY
TQALLNYKIAEIQLIKSNGNIKSLVQ