Protein Info for CA265_RS23725 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: urease-associated protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 231 signal peptide" amino acids 1 to 30 (30 residues), see Phobius details TIGR02117: conserved hypothetical protein" amino acids 26 to 223 (198 residues), 168.9 bits, see alignment E=5.5e-54 PF09601: DUF2459" amino acids 47 to 216 (170 residues), 198.6 bits, see alignment E=3.3e-63

Best Hits

KEGG orthology group: None (inferred from 46% identity to cpi:Cpin_6784)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9ZBW4 at UniProt or InterPro

Protein Sequence (231 amino acids)

>CA265_RS23725 urease-associated protein (Pedobacter sp. GW460-11-11-14-LB5)
MNKRFLKYAGRCCIALIMLIGFYFLTAFACSRITINAYPKNAKEVNIYIMTNGVHTDIIV
PAVSAEMDWTKEISYQNTLEADSTYQYLAMGWGDKKFYLETPEFSDLKLSNGLRAISGLS
TSAMHTTYYKNIWEDADCKKISISKTQYRQLIDYILNSFKKDEAGHLINVKSNIHYDIGD
AFYEAKGSYSIFKTCNTWANAALKACGQRSCLWTIFDTGIFLKYSDRNTVK