Protein Info for CA265_RS23445 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: methylenetetrahydrofolate reductase [NAD(P)H]

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 317 PF02219: MTHFR" amino acids 4 to 315 (312 residues), 239.7 bits, see alignment E=2.2e-75 TIGR00676: methylenetetrahydrofolate reductase [NAD(P)H]" amino acids 16 to 316 (301 residues), 297.1 bits, see alignment E=6e-93

Best Hits

KEGG orthology group: K00297, methylenetetrahydrofolate reductase (NADPH) [EC: 1.5.1.20] (inferred from 80% identity to psn:Pedsa_3414)

Predicted SEED Role

"5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20)" in subsystem Methionine Biosynthesis or One-carbon metabolism by tetrahydropterines or Serine-glyoxylate cycle (EC 1.5.1.20)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

No predicted isozymes

Use Curated BLAST to search for 1.5.1.20

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9ZBA5 at UniProt or InterPro

Protein Sequence (317 amino acids)

>CA265_RS23445 methylenetetrahydrofolate reductase [NAD(P)H] (Pedobacter sp. GW460-11-11-14-LB5)
MKITDHIKNAKGKTLFSFELLPPVKGQSIQWIYDAIEPLLEFNPPFIDVTSLREDYIYKE
QANGLLQKVSYRKRPGTIAICAAIIHKYKVDAVPHLICGGFTKEETENALIDLQFLGIDN
VLALRGDARKADGNFVPTPGGHCYATDLIEHIKNHNEGKFLHEDVETFKSDFCIGVAGYP
EKHFEAPNMSTDFKYLKKKVEAGAEFIVTQMFFDNQKYFDFVKKCRENDINVPIIPGLKP
ISTLSQLNVLPKIFHIDLPDELTDALSHAKNNNEAKEIGTEAMIKQCKELIDFGAPVLHF
YTMGRPEQTKKIAKAIF