Protein Info for CA265_RS23215 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 296 PF02678: Pirin" amino acids 24 to 123 (100 residues), 113.9 bits, see alignment E=3.7e-37 PF05726: Pirin_C" amino acids 196 to 275 (80 residues), 52 bits, see alignment E=8.4e-18

Best Hits

KEGG orthology group: K06911, (no description) (inferred from 76% identity to fjo:Fjoh_3490)

Predicted SEED Role

"Pirin, N-terminal:Pirin, C-terminal"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9ZAW9 at UniProt or InterPro

Protein Sequence (296 amino acids)

>CA265_RS23215 hypothetical protein (Pedobacter sp. GW460-11-11-14-LB5)
MSNIKLIIEERPANIGNFMVGRLLPFREKRMVGPFSFIDHMGPAALSDHENLDVPPHPHI
GLSTLTFLFEGEITHKDSLGSDIVIKPGQVNWMTSGSGIVHSERTPEYLRHSDKMLHGLQ
IWVALPKDLEQMEPEFCHVEGADIPGWTQDGVDFKLIAGEAFGYKSPVPVYSPLYFLELK
STKQQKLNIGDYLFGESALYILEGAIESEGNIFEPRLILIANDAKLCEFTMHENTTVYIF
GGEAFPEERFIYWNFVASDKELIEKAKTKWLEQSFKPVPGETGFVPLPDPIRNIKH