Protein Info for CA265_RS23130 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 265 transmembrane" amino acids 20 to 40 (21 residues), see Phobius details amino acids 60 to 84 (25 residues), see Phobius details amino acids 112 to 136 (25 residues), see Phobius details amino acids 159 to 180 (22 residues), see Phobius details amino acids 188 to 208 (21 residues), see Phobius details amino acids 241 to 259 (19 residues), see Phobius details PF12730: ABC2_membrane_4" amino acids 9 to 197 (189 residues), 53.8 bits, see alignment E=1.3e-18

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9ZBP8 at UniProt or InterPro

Protein Sequence (265 amino acids)

>CA265_RS23130 ABC transporter permease (Pedobacter sp. GW460-11-11-14-LB5)
MHALYISLVSEFYKSRKTLAFWAAILLPLIICGLITFGFYSSSEKVLANHYPPMILWAQY
SGAALGVMGFLVMPFYVIFMAFSVNNIEHKNDTWKMLFAQPLNKFSIYAAKYLYAIFLIF
ICLFLFASLTFAFGHLLQVLVPKYNFNQYNPQNILINSYAKLFLSSLGILSLQFILSLIW
GDFLKPMGIGFVGTIMGIITANVGWKYAYLIPYSLPALALKMTRVKKGGDPLDFPVFTQE
IWTSLIYAAILFIIGYFIVTKKSIK