Protein Info for CA265_RS22730 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: ribosome assembly cofactor RimP

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 154 PF02576: RimP_N" amino acids 18 to 79 (62 residues), 55.1 bits, see alignment E=8.7e-19 PF17384: DUF150_C" amino acids 83 to 151 (69 residues), 33.5 bits, see alignment E=3.8e-12

Best Hits

Swiss-Prot: 38% identical to RIMP_GRAFK: Ribosome maturation factor RimP (rimP) from Gramella forsetii (strain KT0803)

KEGG orthology group: K09748, ribosome maturation factor RimP (inferred from 79% identity to phe:Phep_0139)

Predicted SEED Role

"FIG000325: clustered with transcription termination protein NusA"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9ZAM0 at UniProt or InterPro

Protein Sequence (154 amino acids)

>CA265_RS22730 ribosome assembly cofactor RimP (Pedobacter sp. GW460-11-11-14-LB5)
MQVEKRVAALVEEKIADRPELFLVEVKMLPNNKLIIHVDGDEGISIQDCVAISRHVGFHL
EEENAIEQAYNLEVSSPGVGEPLKLIRQYNKNIGRTVSVKLKEGLKKEGKLLAVTENNLL
IEESVKEKGKKAVAIETAIPFNDILETSVLISFK