Protein Info for CA265_RS21615 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: metalloprotease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 280 transmembrane" amino acids 21 to 40 (20 residues), see Phobius details PF04228: Zn_peptidase" amino acids 1 to 275 (275 residues), 363.8 bits, see alignment E=3.8e-113

Best Hits

KEGG orthology group: K07054, (no description) (inferred from 77% identity to phe:Phep_4250)

Predicted SEED Role

"YpfJ protein, zinc metalloprotease superfamily"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9ZB64 at UniProt or InterPro

Protein Sequence (280 amino acids)

>CA265_RS21615 metalloprotease (Pedobacter sp. GW460-11-11-14-LB5)
MQWFGKGSNNVEDGRSGGGGKTILGGGVGIIIVVLGLIFGKDLTGLVGQIPATAGTEEVK
QGVPANDPQAQFVAGVLESTEQVWDKEFQAMGKQYEYPKLRLFRDAVQTACGNAGANVGP
FYCPGDHKVYIDLSFYDDLKNRFGAAGDFAQAYVIAHEVGHHVQNLLGISEKLDQARGQV
SEKEYNRLSVKLELQADFFAGLWAHNAQNLKDFKLDEGDIEEALTAANAIGDDKLQKQAT
GDVQPDSFTHGTSAQRMYWFKKGFETGDIKQGDTFNSNNL