Protein Info for CA265_RS21550 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: zinc-dependent metalloprotease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 838 signal peptide" amino acids 1 to 27 (27 residues), see Phobius details PF17162: DUF5118" amino acids 55 to 103 (49 residues), 80.6 bits, see alignment 8e-27 PF17148: DUF5117" amino acids 116 to 303 (188 residues), 207.6 bits, see alignment E=2.2e-65 PF16313: DUF4953" amino acids 436 to 740 (305 residues), 414.1 bits, see alignment E=6e-128

Best Hits

KEGG orthology group: None (inferred from 57% identity to psn:Pedsa_2861)

Predicted SEED Role

"FIG00552894: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9ZA09 at UniProt or InterPro

Protein Sequence (838 amino acids)

>CA265_RS21550 zinc-dependent metalloprotease (Pedobacter sp. GW460-11-11-14-LB5)
MKKNFKVLALAGIVALGVAGSGSVYAQKKSKTTKGATPATPTATPAAAPKKEGIKPFSEV
ITAKARTTNGLFKTHKVDDKWYFEIPDSMINREMLVVTRLAKVPAGVKVGNQQYGGEQLN
EQVWKWERRGKQVYIRVPSYSTKADPNSDMYESVQNSNLAQILASFEIKAYNKDTTGVVI
DVTDFYNGDVMAIGATDQIRKAYKVTMYDATRSYIDTVKTFPINVEVKTAKTYRAAESPT
DNSNGAVTFEFNTSMLLLPKTPVKARIMDSRVGFFGQSQIDYGTNAQKAERTAYIHRWNL
VPKDTNAYKRGELVEPVKPIVIYIDPATPKKWVPFLIQGINDWQVAFEAAGFKNAIIGKE
APSPQQDPQFSVEDSRYSVVRYFASDIANAYGPHISDPRTGQILETHIGWYHNVMNLLRN
WYFVQTAAINPEVRKAKFTDAQMGELIRFVSSHEIGHTLGLPHNFGSSYAYPVDSLRSKA
FTDKHGTAPSIMDYARFNYIAQPGDGVTKLHPQIGEYDKWVVKWGYSWIPGNKTAEQEKE
ILDQWTLKNAGNPLYFYGRQGTSLDPRLQSEDLGDNAMKASTYGIANLKRILPNVEKWTY
QKGKDYSDLKEIYTEIVGQFNRYMGHVAANVGGLSENFKTYEQKGPVYAYLPKAKQKEAV
TFFNQQLFTTPLWLISNDQLSKFDNGVLLNRIKSVQANTLGNLLSAPRIARLLDNETKNG
AAKAYTLPELFTDLRSSVFVAGRADAFKRNLQRAYVDRLQDLMTKEAELPVGFPADYAAS
YGLTPINVGLSDIRPLVRAELKTLLATTKARATAGDAITKAHYEDLNIRIKDILDPKK