Protein Info for CA265_RS21285 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: DNA-binding response regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 208 PF00072: Response_reg" amino acids 7 to 119 (113 residues), 81.9 bits, see alignment E=3.8e-27 PF00196: GerE" amino acids 147 to 201 (55 residues), 63.2 bits, see alignment E=1.3e-21

Best Hits

KEGG orthology group: None (inferred from 56% identity to hhy:Halhy_1457)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9ZAK3 at UniProt or InterPro

Protein Sequence (208 amino acids)

>CA265_RS21285 DNA-binding response regulator (Pedobacter sp. GW460-11-11-14-LB5)
MSQNLRIVLIEDDDILRMGYESLLSDVDDFVVVNAYASYDLARKHLEADHPDVILLDIQM
PGTNGLQALPFIKKTLPTANIIILTVFDSPELVFEALTMGAGGYLTKNSSASKIIDAVRE
VSTGGGAMSTNVARIVMHSFQKNLNSPLTKRETEILDRIANGQTKSQIANDLFIDQETVR
SHVKNIYIKLDVNSKSEAIKTAKEKRFI