Protein Info for CA265_RS20630 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 486 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details PF14322: SusD-like_3" amino acids 84 to 244 (161 residues), 86.3 bits, see alignment E=3.3e-28 PF07980: SusD_RagB" amino acids 346 to 486 (141 residues), 100.2 bits, see alignment E=1.8e-32

Best Hits

Predicted SEED Role

"RagB/SusD domain protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (486 amino acids)

>CA265_RS20630 hypothetical protein (Pedobacter sp. GW460-11-11-14-LB5)
MKIRTVLYMGIFLVISLSCKKLVEIAPPRTSLTAEAVFSNDESAIAAVNQVYANASGSDL
LQASFLGLSSFPGLSSDELMVYLPNTYTAMAEFNRNALTALTATSNANQFWNRFYSTEVY
YSNRIIEGLSEQKTSGEDSNSKLSGKVKKQLLGEMKFIRAFSYFYLVQLYGDVPLLTSSN
YAVNSVATRTSKEIVYQQIISDLKYAVDNLSDAYLQSDLTTSVATSPRIRPIKWAAKALL
ARVYIFTGNTAAAETESKEVINNTNLYSLTTLENVFKANSREAIWQLQPVVTGRNTQEAW
AFIATGAELINGTKVYYLNNALVSAFESGDLRRNSWIGSTIANGVTCYYPFKYKSATLNS
PVTEYSMVLRVAEQYLICAEACVKNNKISEGQGFLNAIRNRAGLGNTTASTKDELLDAIL
AERRIELFSEFGHRWFDLKRTGKIDDIMRVATPNKGGLDWQPYQSFYPIMPSQMLLNQNI
TQTPGY