Protein Info for CA265_RS20415 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 807 signal peptide" amino acids 1 to 19 (19 residues), see Phobius details PF06452: CBM9_1" amino acids 38 to 211 (174 residues), 41.8 bits, see alignment E=1.1e-14 PF19313: DUF5916" amino acids 230 to 803 (574 residues), 663.1 bits, see alignment E=4.1e-203

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9Z9H3 at UniProt or InterPro

Protein Sequence (807 amino acids)

>CA265_RS20415 hypothetical protein (Pedobacter sp. GW460-11-11-14-LB5)
MKRCILLFFIFICAFSRAQDISKQRQLAAKRTSLSPKIDGILDDECWNNVPIATDFIQIR
PNPGKIETPDRRTEMKVLYDDVAIYVYARMYDHPDSVSHELVSRDNIGNADFISIIVDPF
YDKMNGNGFFVTAAGVQFDAKYSQVGDEDSNWNAVWESAVKIDDKGWTCEMKIPYSALRF
SSKDIQNWGLNFSRRVQRKNLQTFWNFVDPKVNGFINQEGLWMGIKDVKPPLRLSFSPYI
SAYVNHYPVNLPGVKNTTSRFNGGMDVKYGINNSFTLDMTLVPDFGQVQSDNRILNLTPF
EVKFNENRQFFTEGTELFNKGDLFYSKRIGSIPSYYNYSEVVSGDKIVKDQTEAKVLNAT
KISGRTAKGLGIGIFNAITNRMETEVEDAQGNLRMVETQPLTNYNILVFDQSLKNNSSAT
FINTNVLRQGSAYDANVSALLFNLNNKGNKYFVNGGGKMSYLRGEESSTGYSYTLRFGKQ
SGNFTWSYNQVYADDKFDPSDMGFFTNNNFLDQRIGIGYNVYKPSKWYNQFESWLNLTYS
RRAIPSAYQKIGTNAGYWVQFKNQWSAELDLSWDRKSNDFYEARNGQLYRAPENYGISLY
INPNRAKAYNFGGNVRYFEQQLFGGKQYNFYFFQNLRLNDKIAFGLDLNFNPNYNYVNWV
TAQGDQAIFSKYDRRTVENSFDAKYTFTNLMGLTVVLRHYWSDRRNKEFYLLKPDGNLTA
YQGATLTGMDRNYNVFNIDLIYTWQFAPGSTLSVSYKDAAETYDTFYTQRYDKNLSGILN
APQNNSLSVKVLYYIDYLDLKKKRKKD