Protein Info for CA265_RS19840 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: pectin esterase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 340 signal peptide" amino acids 1 to 26 (26 residues), see Phobius details PF01095: Pectinesterase" amino acids 34 to 331 (298 residues), 253.9 bits, see alignment E=7.4e-80

Best Hits

KEGG orthology group: None (inferred from 65% identity to phe:Phep_1149)

Predicted SEED Role

"rhamnogalacturonan acetylesterase" in subsystem L-rhamnose utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9Z9Y1 at UniProt or InterPro

Protein Sequence (340 amino acids)

>CA265_RS19840 pectin esterase (Pedobacter sp. GW460-11-11-14-LB5)
MVKSTIVCIAATLLLYLGICSKVFAQDPKYPSMIIVAQDGSGNYKTIQEAINSVRDLGEK
EVKIQVKNGTYKEKLIIPSWKIKISIIGEKAENTIITFDDYSGKPNPMGKDIFGLPKFST
YTSFTVLVQGNDIHLENLTIINSAGRVGQAVALHVEGDRFVAKNCRLLGNQDTLYAGIEN
SRQYYHDCYIEGTTDFIFGKATVVFQNCTIKSLSDSYVTAASTSAQQKFGFVFINCKLIA
DPAVTKAYLGRPWRPYAKTVFMACDLGKHILPEGWNPWKGDLMFPNKELTVFYAEYKNKG
DGASPKTRLPWTKQLTDKEAKTYTLKNILGGADQWNPPQL