Protein Info for CA265_RS19800 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: GLPGLI family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 260 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details TIGR01200: GLPGLI family protein" amino acids 6 to 239 (234 residues), 149.5 bits, see alignment E=6.3e-48 PF09697: Porph_ging" amino acids 167 to 196 (30 residues), 30.7 bits, see alignment 1.9e-11

Best Hits

KEGG orthology group: None (inferred from 53% identity to shg:Sph21_4030)

Predicted SEED Role

"FIG00909431: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9Z990 at UniProt or InterPro

Protein Sequence (260 amino acids)

>CA265_RS19800 GLPGLI family protein (Pedobacter sp. GW460-11-11-14-LB5)
MKTTLKYIILFAVIFISKSLMAQNIHFVQNGVIEFEKRSNMYALIKKKINKDNESYMVPA
LDQYKKNNPQFKVAKSTLSFNKDKSLYKWPTVEETANPNWAARDALVDLKNTIATDYNTR
TSISQKAVYEDTYLVKDSLRKINWKITDETREIAGYECRRANAIIMDSIYVVAYYSNQIA
VSGGPESFTGLPGMILGLALPHQNITWFATKVTEVAVPEKDLSPPTKGKPTDNKGLTDKI
TSALKNYGPEALAELKAFSL