Protein Info for CA265_RS19390 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: UDP-2,3-diacylglucosamine hydrolase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

Best Hits

KEGG orthology group: None (inferred from 80% identity to phe:Phep_4032)

Predicted SEED Role

"Ser/Thr protein phosphatase family protein, UDP-2,3-diacylglucosamine hydrolase (EC 3.6.1.54) homolog" (EC 3.6.1.54)

MetaCyc Pathways

lipid IV_A biosynthesis (P. gingivalis) (9/9 steps found)
lipid IV_A biosynthesis (H. pylori) (6/6 steps found)
superpathway of (Kdo)₂-lipid A biosynthesis (13/17 steps found)
lipid IV_A biosynthesis (E. coli) (5/6 steps found)
lipid IV_A biosynthesis (P. putida) (5/6 steps found)
lipid IV_A biosynthesis (Vibrio cholerae serogroup O1 El Tor) (5/6 steps found)
lipid IV_A biosynthesis (generic) (5/6 steps found)
lipid IV_A biosynthesis (2,3-diamino-2,3-dideoxy-D-glucopyranose-containing) (4/6 steps found)
superpathway of Kdo₂-lipid A biosynthesis (13/25 steps found)

Isozymes

Compare fitness of predicted isozymes for: 3.6.1.54

Use Curated BLAST to search for 3.6.1.54

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9Z907 at UniProt or InterPro

Protein Sequence (284 amino acids)

>CA265_RS19390 UDP-2,3-diacylglucosamine hydrolase (Pedobacter sp. GW460-11-11-14-LB5)
MDKRTVDVVVISDVHLGTYGCHAKELLKYLKSIKPKILILNGDIIDIWQFSKSYWPESHM
KVIRKLMKFVSEGVQVHYLTGNHDEMLRKFDGMEMGTFHLQNKLILELDGKKAWFFHGDV
FDVTMQHSKWLAKLGAVGYDTLILINSFVNWVLTAFGREKMSFSKKIKAKFKDAVKFINS
FEQTAAELAIEKGYNYVVCGHIHQAEQREIATEDGKVVYLNSGDWVESLTALEYENQKWT
VFKYEHQHFTKDELDEGILSDAEDLKSKLDINILLQNIKYEIAQ