Protein Info for CA265_RS19360 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: peptidylprolyl isomerase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 694 transmembrane" amino acids 12 to 32 (21 residues), see Phobius details PF13624: SurA_N_3" amino acids 4 to 173 (170 residues), 48.8 bits, see alignment E=1.8e-16 PF13623: SurA_N_2" amino acids 5 to 150 (146 residues), 119.8 bits, see alignment E=2.3e-38 PF13145: Rotamase_2" amino acids 223 to 336 (114 residues), 38 bits, see alignment E=6.6e-13 PF13616: Rotamase_3" amino acids 329 to 438 (110 residues), 99 bits, see alignment E=6.5e-32 PF00639: Rotamase" amino acids 348 to 437 (90 residues), 59.4 bits, see alignment E=1.5e-19

Best Hits

KEGG orthology group: K03770, peptidyl-prolyl cis-trans isomerase D [EC: 5.2.1.8] (inferred from 69% identity to phe:Phep_4026)

Predicted SEED Role

No annotation

Isozymes

Compare fitness of predicted isozymes for: 5.2.1.8

Use Curated BLAST to search for 5.2.1.8

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9Z955 at UniProt or InterPro

Protein Sequence (694 amino acids)

>CA265_RS19360 peptidylprolyl isomerase (Pedobacter sp. GW460-11-11-14-LB5)
MGLMTFLRNRAGYILVFAIGFAIVAFLVGDAINVGKPFWSANQKVVGSIDGKDINIDEFG
PKVDQGVNQMKQQYGGSANAQMTAMAVDQAWNAELAKVLLTKEYDRLGLTVSEDELLDLL
QGQNPSPLIKQYFSNPQTGQLDRATLMNFLKSKEPQALQQSNMLQEEIKNQALQTKYSNL
IRNSVYVTSLEATDEYTNRNKLANFKYVSLDYTSIPDASVKLTDGDYSEYYDQNKARFNN
PQETRAFEYVTFSISPTKADSLAIKTQVDKIAADFQVAKNDSLFAAINSDVKVPFTYITK
GKLDPAVDSAVFALPAGGFYGPKLTGNSYKIVKVVSTRISPDSVKASHILIDPAKVGGED
KALKLADSLKALILKGANFGELAKTYSVDGSKDKGGEMPAFARGAMVPEFENAAFDGKTG
DLKVVKSQFGYHVLKIEKQIGSSKVAKLAYVEKALNASSKTQAAAYKAASNFLTEVKGND
FSKFAAQKGLKVAVADKVASTQGFAAGLDNPRKLIQDAYAADKGDVLPEIYTMSNAYVVA
RLTTISPKGILSLADVKKEIEPMVINAVKAKQLKEKLANAGKGSIEQVAAKVARPVNPVQ
NVVMANPVIPGVAQENALVGSVFGSQPGKLSAPVQGERGVYVFSVDGFTSPAPIANMFKQ
KESMMLSLGQRSLGSAFQALQENAKIKDNRVKFY