Protein Info for CA265_RS18920 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: translation elongation factor Ts

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 281 TIGR00116: translation elongation factor Ts" amino acids 5 to 280 (276 residues), 243.4 bits, see alignment E=1.5e-76 PF00889: EF_TS" amino acids 76 to 280 (205 residues), 203.3 bits, see alignment E=1.7e-64

Best Hits

Swiss-Prot: 70% identical to EFTS_CYTH3: Elongation factor Ts (tsf) from Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469)

KEGG orthology group: K02357, elongation factor Ts (inferred from 70% identity to chu:CHU_3036)

Predicted SEED Role

"Translation elongation factor Ts"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9Z8M0 at UniProt or InterPro

Protein Sequence (281 amino acids)

>CA265_RS18920 translation elongation factor Ts (Pedobacter sp. GW460-11-11-14-LB5)
MSTVQITAADVNKLRQQTGAGMMDCKKALLEANGDFEAAVDLLRKKGQKVSAARSGNATS
EGLVSINVSADGTNGKLVALACETEPVSKVEDFRNLAQAVLAAAVANNPANTEELSAITL
EDGRTVAETITELTGKIGEKIVIQEYANISGEKIVSYIHSNGKMGVLVVFEGANGADITE
AGKDVAMQIAAMNPVAVDKDGVDPATIEREIEIAKDVIRQEGKPEEMVEKIAAGKLNKFY
KDSTLLNQEFVKDSSIDVRKFLDNTSKGLTVSAFKRVQLGA