Protein Info for CA265_RS18810 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: thioredoxin family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 177 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details PF13899: Thioredoxin_7" amino acids 35 to 121 (87 residues), 40.6 bits, see alignment E=3.6e-14 PF03190: Thioredox_DsbH" amino acids 40 to 151 (112 residues), 27.2 bits, see alignment E=5.2e-10 PF13098: Thioredoxin_2" amino acids 46 to 127 (82 residues), 32.1 bits, see alignment E=1.9e-11

Best Hits

KEGG orthology group: None (inferred from 51% identity to lby:Lbys_3546)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9Z8Q9 at UniProt or InterPro

Protein Sequence (177 amino acids)

>CA265_RS18810 thioredoxin family protein (Pedobacter sp. GW460-11-11-14-LB5)
MKRLVILLTAVFLSTAAFSQAKKEGVHIYNPQADAKAEIAAAVGKAAKENKHVLLQVGGN
WCSWCIAFHNLVDSTATLKKYINDNFETVLVNYSPENKNESVLASLGYPQRFGFPVFLIL
DGKGKVLHIENSSYLETEEVGANGKKKVGHDVKKITSFLKGWTTTAVNPETYKSKAK