Protein Info for CA265_RS18780 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: YicC family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 287 PF03755: YicC_N" amino acids 1 to 151 (151 residues), 130.5 bits, see alignment E=7.6e-42 TIGR00255: TIGR00255 family protein" amino acids 1 to 286 (286 residues), 196.5 bits, see alignment E=3.8e-62 PF08340: DUF1732" amino acids 203 to 286 (84 residues), 107.5 bits, see alignment E=2.7e-35

Best Hits

KEGG orthology group: None (inferred from 74% identity to phe:Phep_4196)

Predicted SEED Role

"Protein YicC"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9Z8K6 at UniProt or InterPro

Protein Sequence (287 amino acids)

>CA265_RS18780 YicC family protein (Pedobacter sp. GW460-11-11-14-LB5)
MTGYGLATADYANAKYSVEIKSLNSKFLELNLKYPKAFSDKELILRNICSKDIERGKVSL
SINVERTNGEVTGATINTALLSHYYKQLIAVNDELSAGSSNLLQTALTFPDVISYKEESV
SEDEWNHLFQIFTSALANFNKFREDEGAVLKADLELRIKNILSYFKSVEELEPKRITAIR
DKFTQFLDDAVGKVNIDQNRFEQELIYYIDKIDITEEKTRLKSHCDYFLQTLASKEANGK
KMGFISQEIGREINTMGAKANDAQMQQFVVGMKEELEKIKEQLLNVL