Protein Info for CA265_RS18440 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: glycoside hydrolase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 506 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details PF00251: Glyco_hydro_32N" amino acids 32 to 338 (307 residues), 285.7 bits, see alignment E=5.7e-89 PF08244: Glyco_hydro_32C" amino acids 367 to 501 (135 residues), 101.6 bits, see alignment E=4.4e-33

Best Hits

Predicted SEED Role

"Sucrose-6-phosphate hydrolase (EC 3.2.1.B3)" (EC 3.2.1.B3)

Isozymes

No predicted isozymes

Use Curated BLAST to search for 3.2.1.B3

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9Z9J4 at UniProt or InterPro

Protein Sequence (506 amino acids)

>CA265_RS18440 glycoside hydrolase (Pedobacter sp. GW460-11-11-14-LB5)
MFKTKYILAFLMCCSISTFAQQPTPQWRPTYHFTAPSNWLNDPNGLIYLNGEFHLYYQYN
PFENKWGHMSWGHATSKDLVNWKHLPVAIPEKITKDTTTMIFSGSAVLDKRNVSGLGKGK
APVVAFYTADLPKQRNESQYMAYSNDGGLSFTNYAKNPIIDLNKKDFRDPNVWWHESTQQ
WIMTVAMVDEHQARFYGSKNLKDWTMLSDFGKQGNQGSGWECPFIIPLAVDGNKDNTKWV
LAISLFGPKGPTMQYFVGDFDGKTFKNDNDGKLTLLVDEGDSFYAAIPWNDAPKRQRILL
GWLQPGGKETFPWKGQMSIPRDLALKTTPEGIRLFQQPASLIGDNMKKHSGGKVITRQNL
IIDQHIDLGTSQNSYWIDAEFSVSDAEKIGFKLAQLKDEKGNVVKEVEVGYDAIKKQLYV
DCTRSEKGIKNDKNIIQTAAVNSVNGKIKLQVLFDKSSLEVFGNAGEKVISTMIFPDEKA
TGLAAFSNGGKAVLNKLKVWDMSGRK