Protein Info for CA265_RS18115 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: gliding motility protein GldN

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 304 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details TIGR03523: gliding motility associated protein GldN" amino acids 48 to 304 (257 residues), 166.6 bits, see alignment E=3.7e-53 PF19841: GldN" amino acids 80 to 303 (224 residues), 236.2 bits, see alignment E=2e-74

Best Hits

Predicted SEED Role

"GldN"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9Z9E4 at UniProt or InterPro

Protein Sequence (304 amino acids)

>CA265_RS18115 gliding motility protein GldN (Pedobacter sp. GW460-11-11-14-LB5)
MKRILSIAILVLLTTFAFAQKKPTRLAPKKAAPVVAAPPVADTVKAPVKTAKKKLKVPPK
DGFYARKDIDSTEMVPLADVREEDVFYAKRIWREIDLRDTVNSALKSPKSRLIDVLIAAI
KKDELTAYSPIDSALNEDDAFLNPMSADSAAKSALGTAEVSNNKTGTVTTVVNDFNPELF
LKFRIKEDWIFDTKRSVFEPRIVGIAPLKYNEVSKQWQPVFWVYYPEAREILTKKRLINT
NNDASSLSFDDFFIRRLFSSYIVKESNPGDNKIRDIITDPRERLYESERIKKSVLDYEQG
LWEY