Protein Info for CA265_RS16005 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 241 transmembrane" amino acids 42 to 68 (27 residues), see Phobius details amino acids 140 to 160 (21 residues), see Phobius details amino acids 172 to 190 (19 residues), see Phobius details PF04024: PspC" amino acids 13 to 70 (58 residues), 72.1 bits, see alignment E=2.6e-24 PF18917: DUF5668" amino acids 143 to 189 (47 residues), 39.9 bits, see alignment 3.6e-14

Best Hits

Predicted SEED Role

"FIG00908235: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9Z745 at UniProt or InterPro

Protein Sequence (241 amino acids)

>CA265_RS16005 hypothetical protein (Pedobacter sp. GW460-11-11-14-LB5)
MIFKHKMNNVMEKKLFRNEHDKMIAGVASGLADYMQVEVTIIRLLFALSAIFMAGGGLIA
YIIMWIIVPVNNDPAARFSKFNDYFGNKNPNAQPFGTADPFAGPANAGNQNWTQPVDGGQ
KTPFETQPNFDKFNKSSDTGRTIGGLVLLVIGCFFLMREMDFIPDWFSIRNLFRYMWPLI
FIALGVSIIAKSKRKNDWAAFQNQQEAEQKKTADFTETVVENEPATPVNKDDNSTSANPQ
V