Protein Info for CA265_RS15130 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: 4-hydroxybenzoate octaprenyltransferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 285 transmembrane" amino acids 7 to 28 (22 residues), see Phobius details amino acids 38 to 61 (24 residues), see Phobius details amino acids 82 to 103 (22 residues), see Phobius details amino acids 108 to 125 (18 residues), see Phobius details amino acids 132 to 152 (21 residues), see Phobius details amino acids 158 to 180 (23 residues), see Phobius details amino acids 202 to 223 (22 residues), see Phobius details amino acids 229 to 249 (21 residues), see Phobius details amino acids 261 to 282 (22 residues), see Phobius details TIGR01475: putative 4-hydroxybenzoate polyprenyltransferase" amino acids 2 to 282 (281 residues), 302.3 bits, see alignment E=1.8e-94 PF01040: UbiA" amino acids 17 to 264 (248 residues), 194.5 bits, see alignment E=9.8e-62

Best Hits

KEGG orthology group: K03179, 4-hydroxybenzoate octaprenyltransferase [EC: 2.5.1.-] (inferred from 87% identity to phe:Phep_0975)

Predicted SEED Role

"Menaquinone via futalosine polyprenyltransferase (MenA homolog)"

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 2.5.1.-

Use Curated BLAST to search for 2.5.1.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9Z7E8 at UniProt or InterPro

Protein Sequence (285 amino acids)

>CA265_RS15130 4-hydroxybenzoate octaprenyltransferase (Pedobacter sp. GW460-11-11-14-LB5)
MKKYFSLVLFAHSVFALPFAMIGFFLGVTTTENPFSWYKLILVLLCMVFARNSAMAFNRY
LDRNIDAKNPRTKMRDIPAGKVSANEALIFVIANCVLFAITTYFINPLCFYLSPVALFVV
LFYSYTKRFTALCHLVLGLGLALAPIGAYIAVTGHFALVPVLYSLTVLFWVSGFDIIYAL
QDEAFDREEKLHSIPSALGIKNALNVSVLLHILSATCVILPVFFTSFSWVYYVGIVFFCS
MLIYQHLLVKPNDISKVNRAFQTLNGYASVVFAICFLIDAYLRHK