Protein Info for CA265_RS15050 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: lysine transporter LysE

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 208 transmembrane" amino acids 6 to 27 (22 residues), see Phobius details amino acids 39 to 60 (22 residues), see Phobius details amino acids 72 to 90 (19 residues), see Phobius details amino acids 110 to 135 (26 residues), see Phobius details amino acids 147 to 163 (17 residues), see Phobius details amino acids 184 to 204 (21 residues), see Phobius details PF01810: LysE" amino acids 14 to 201 (188 residues), 73.8 bits, see alignment E=6.9e-25

Best Hits

KEGG orthology group: None (inferred from 63% identity to phe:Phep_0991)

Predicted SEED Role

"FIG00907202: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9Z6Q3 at UniProt or InterPro

Protein Sequence (208 amino acids)

>CA265_RS15050 lysine transporter LysE (Pedobacter sp. GW460-11-11-14-LB5)
MFEAILLGIGAGIISSFLTGPVFFAMIKTSIERGFKAGFSLAVGVIISDVVLIGLVLFGS
QFFDYKAEFDKYVGTIGGLFLLAVGIYYLVSKITVHYNSSTLQKVSKRGYVIKGFLMCIL
TPSTLMFWIIVSGIISVKLNNMLNEKLVCFFIAMATQLSIDGAKSFYSSKLRYKIKEDAL
KKLNKIAGVVIIFFAIWLIVKTYLKFYA