Protein Info for CA265_RS14980 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: TIGR01212 family radical SAM protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 315 TIGR01212: radical SAM protein, TIGR01212 family" amino acids 12 to 314 (303 residues), 297.3 bits, see alignment E=5.5e-93 PF04055: Radical_SAM" amino acids 50 to 211 (162 residues), 51.1 bits, see alignment E=1.9e-17 PF16199: Radical_SAM_C" amino acids 220 to 303 (84 residues), 83.1 bits, see alignment E=1.2e-27

Best Hits

KEGG orthology group: K07139, (no description) (inferred from 88% identity to phe:Phep_1005)

Predicted SEED Role

"COG1242: Predicted Fe-S oxidoreductase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9Z6M0 at UniProt or InterPro

Protein Sequence (315 amino acids)

>CA265_RS14980 TIGR01212 family radical SAM protein (Pedobacter sp. GW460-11-11-14-LB5)
MGTLVDSGIKGYKNYGTHLREKYKGQRVFKVIVDGGFTCPNRDGSKGYGGCTYCNVDSFT
PEPSRKNPNIKDQLAEGMFRAKTSYKADKYIVYFQPNTNTYAPVHYLKMMYDEALSINTE
DIVGFAVGTRPDCIDAEKVALLESYTDRFDVDLEMGMESIYDETLDQINRGCSHGEFVAA
VELLKDSKLDLCVHTIFGFPWETREQMHGYIHEINRFPQIKFVKFHHLHVVEGSIMGAKY
KKEPFKLFSLEEYTDLLCELIPLLRPDIVIQRLFGISDWDLLIAPNWGLNKSAIQTYMDK
EIEKRGIVQGSAYFS