Protein Info for CA265_RS14700 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1033 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details TIGR04056: TonB-linked outer membrane protein, SusC/RagA family" amino acids 103 to 1032 (930 residues), 494.1 bits, see alignment E=1.1e-151 PF07715: Plug" amino acids 127 to 247 (121 residues), 67.5 bits, see alignment E=1.4e-22 TIGR04057: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region" amino acids 223 to 251 (29 residues), 49.1 bits, see alignment (E = 3.6e-17)

Best Hits

KEGG orthology group: None (inferred from 49% identity to sli:Slin_3036)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9Z6S1 at UniProt or InterPro

Protein Sequence (1033 amino acids)

>CA265_RS14700 hypothetical protein (Pedobacter sp. GW460-11-11-14-LB5)
MNCAQRIILLIGLIFPLGVYAQTKVSLNFTEASFEQVIAAIQTQTLYHFAYGESKIPKHR
VSIKVEEEEAIKVIDQLLLGSGYTYSVLPNNLIVIRKNAEGKMDRDSVRFLKEVVITALG
IEKDNHKVGYALTTIKGSSITKARESNLIMALQGRVAGLNITGVNGGPGSAARVLIRGVS
SMTAASPLFIVNGVPIDNSIRGSANEYGGADYGDGISNINPDDIETITILKGSAASALYG
ARAANGVILINLKSGGEDTKAKFEYNTNLSFDVPVNSTDFQYLYGQGAQNKRPADLYNAI
STGLLSWGEIMDGKLTPQVDGSMRPYSPVKNNIQTFYRTAPAFINTLSLVGGNIKNNYRV
SVSNMDYNSVLTNGSLNRKTLNFYGTVALSPKISLSLTGNYIYEWNKNKSYLSDGPLNPN
YGISALATSLDQSILAPGFDAATGFESRWNADEYKTNPYFLMNKQADYANRNRYISSAVL
KYQLASWASIQGRIGYDSSKDEVVSILPTGTAFSINRQGGINAYNQNRTSELNSDILLSA
SRNLSDKLNLELSMGANYRERKGNSEKIIGSQFKVPYLYVPENLITSTKTLAISKIVTES
AYYTADLSYQRFLNFSVTGRYDIYSTLPANNRGIFVPGISGSFIFSDLLKWKGLDFGKLR
LDFAKTSGEPIVPYTTQIYYTVDNQVNGTPVGGFSGDLPNYNLKPFTLNEIEAGLDLKFF
NSRLDIDFTYFNRITHNEIINAKQSVTTGFTSAYVNLGETRNAGIELALGYTPILTTTSK
WQVNFNLTKVKNTLLSIDGNSNYTLTGTYRPLNANTALVVGKPITQIMAYDYLRDPSGNI
IIGSDGIPKRGNFIPMGGTMPTLYGGITNSFNYKRFSFSFLIDYRFGNKILSATEYYSYV
LGLNKATLVGRATGIVAEGVLENGQKNTINVPAYAYYPELATNISTLSVLNGSFIKLRQA
TLGYAFDPRFLKRTPFSSVGIDLVARNLFTLLKYTKNIDPESQFSPTLGYAGIEGASLPA
TRSFGINFNFKFK