Protein Info for CA265_RS14570 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: aminoacyl-tRNA hydrolase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 135 PF00472: RF-1" amino acids 12 to 127 (116 residues), 60.8 bits, see alignment E=6e-21

Best Hits

Swiss-Prot: 37% identical to ARFB_PSEPU: Peptidyl-tRNA hydrolase ArfB (arfB) from Pseudomonas putida

KEGG orthology group: K15034, ribosome-associated protein (inferred from 73% identity to phe:Phep_1191)

Predicted SEED Role

"Hypothetical protein YaeJ with similarity to translation release factor"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9Z7F7 at UniProt or InterPro

Protein Sequence (135 amino acids)

>CA265_RS14570 aminoacyl-tRNA hydrolase (Pedobacter sp. GW460-11-11-14-LB5)
MLPTREEILRSVSFKTSRSGGKGGQNVNKVSSKVELIFDLDTAAYFDEDEKALLKSRLAH
RLDTEGLLHIVSQEDRSQLLNKEKTVAKLIELLKRSLQVQKKRKATKIPKAVVQKRLKNK
AVNAEKKKNRKIIDF