Protein Info for CA265_RS13955 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: patatin

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 763 signal peptide" amino acids 1 to 13 (13 residues), see Phobius details PF01734: Patatin" amino acids 17 to 210 (194 residues), 110 bits, see alignment E=8.7e-36

Best Hits

KEGG orthology group: K07001, (no description) (inferred from 70% identity to phe:Phep_1271)

Predicted SEED Role

"putative patatin-like phospholipase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9ZDF6 at UniProt or InterPro

Protein Sequence (763 amino acids)

>CA265_RS13955 patatin (Pedobacter sp. GW460-11-11-14-LB5)
MLFVLCCNQLQAQKVGLVFSGGGAKGLAHIGTLKALEENHIPIDYITGTSMGGIVGAMYA
AGYSPAEIEKIALSNDFQNWVNGRYTSDYTYYFQKNAPNASMLTAKVAIDTGFHFSFRSN
LINDIPLNFAFLELFSQASAVSKDNFDNLFVPYRCMVADVLSQKSITVSKGSLAEAVRAT
MTVPIIYRPIKLDGKYVFDGGLYNNFPADVMERDFKPDFVIGANVSSKTYNEYPKNIDDR
LMNRFLVYMFLSKSDSTMIGKNGVYIQPNLATYSVTNFAPVEELIKKGYDATIADMPRIK
ALISKRVSDEELAKRREKFNAKKPDLKFSNIIVTGVNSQQKKYVERLFKSDKVSFNLQDI
KRGYYKLVADQTFETVYPKISYQAATDSYTFEVVAQPKKSFKLELGGNISTRPISNVFLG
AQYNYLNRKSYTFGTSFYSGRFYESVQVNGRVDYPTRLPLFLAAELTYNHWNFYNTSQIF
IENPRPIYIEQSDRKIDLMMGMPLNYNTKIVLHATFINNNDRYSPNNTFAVGDLLDQTIF
NGFRGSLNFEKNSLNRKQYATNGQSFSLSFNYTTGRENYNPGNIFRNTPGFVKIPGSSRL
HQWGSIKLTQENYFLHLKKYTLGYIIEGVISNQPLFSNYYATLLTAPAFYPLQDSRSLFL
DKFRATTYAAGGIKNIYNVKKNLDFRLEGYLFLPHKEFELNNFQDINYAKPITKIRYAGT
ADLVYHSPLGPVSLSYNLYNDAVKRNGVLLHIGYLIYNKRSIE