Protein Info for CA265_RS13070 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 749 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details PF02838: Glyco_hydro_20b" amino acids 25 to 143 (119 residues), 60.4 bits, see alignment E=7.4e-20 PF00728: Glyco_hydro_20" amino acids 146 to 493 (348 residues), 387 bits, see alignment E=2.4e-119 PF13290: CHB_HEX_C_1" amino acids 539 to 593 (55 residues), 51.9 bits, see alignment 1.5e-17 PF13287: Fn3_assoc" amino acids 541 to 596 (56 residues), 52.4 bits, see alignment 1.2e-17 PF07691: PA14" amino acids 611 to 741 (131 residues), 42.9 bits, see alignment E=1.1e-14

Best Hits

KEGG orthology group: K12373, hexosaminidase [EC: 3.2.1.52] (inferred from 51% identity to sli:Slin_3893)

Predicted SEED Role

"Beta-hexosaminidase (EC 3.2.1.52)" in subsystem Chitin and N-acetylglucosamine utilization or N-Acetyl-Galactosamine and Galactosamine Utilization (EC 3.2.1.52)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 3.2.1.52

Use Curated BLAST to search for 3.2.1.52

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9Z676 at UniProt or InterPro

Protein Sequence (749 amino acids)

>CA265_RS13070 hypothetical protein (Pedobacter sp. GW460-11-11-14-LB5)
MKLNNFILVLGLAFFLIAKFTFAQVSLVPQPESLQLLKGNFIFSAGTAISVNTDSVFSMA
IREINLLKKARANGIANKILFTKDANLKPEAYRLRISPTQITIAVSDKLGAFWAVQTLKQ
LAAANAFKTGNTWSLPALEINDQPKFSWRGIHLDVSRHFFDIDYLHRFIDRLAFYKFNKF
HWHLTDDQGWRIEIKKYPELTAKGAWRKLNNQDSACLKLAATNPDYNIPEKHFKMIDGEK
MYGGFYTQVEIKELVSYAAGKGVEIIPEIDMPGHMQAATKLFPWLTSTGSVQREKSFTDP
ICPCKETTFEFAENIFREVARLFPSKYIHLGADEVEKSSWKNIPECEALMKRENLKNIDE
IQSYFVKRMEKYFNSMGKKLIGWDEILDGGVSPTATMMYWRTWVPTAPKHAAEKGNQLIM
TPGEFCYFDAQQDAHSLKKVYGFNPTGFGLNANEQKYVLGGQANLWTEYIPSEQRLEYML
FPRMLAMAEVLWGHQQNFETFSRKMDQQFAVLDAMHINYRFTDLKGFAENNVFLKSAALN
IEAPKNAIVHYTTDGSTPKISSPTYIKPIYIDRTQTIKAAIFGAGGRMGDVFTANYVQTD
YVDAVSLNNPKPGLNFSYYPKFYKVVNLIAEADKTKTATTAAIEIPVEDKAGSFATRHKG
FFYAAEDGIYSFFLRSDDGSVLKMQNKTLIDNDGMHFAIEKSAQIALKKGYHPFELLFLE
GGGGYTLQLEYSINAGKRRAVSSADFFIE