Protein Info for CA265_RS12990 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: chromosome segregation protein SMC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1179 PF13175: AAA_15" amino acids 1 to 410 (410 residues), 42 bits, see alignment E=3e-14 TIGR02168: chromosome segregation protein SMC" amino acids 2 to 1174 (1173 residues), 995.5 bits, see alignment E=1.9e-303 PF02463: SMC_N" amino acids 3 to 1167 (1165 residues), 192.8 bits, see alignment E=1.8e-60 PF13476: AAA_23" amino acids 5 to 217 (213 residues), 79.3 bits, see alignment E=1.9e-25 PF13304: AAA_21" amino acids 26 to 78 (53 residues), 27.2 bits, see alignment (E = 1.1e-09) PF06470: SMC_hinge" amino acids 526 to 622 (97 residues), 53.4 bits, see alignment E=1e-17

Best Hits

KEGG orthology group: K03529, chromosome segregation protein (inferred from 64% identity to psn:Pedsa_0912)

Predicted SEED Role

"Chromosome partition protein smc" in subsystem Two cell division clusters relating to chromosome partitioning

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9Z5K4 at UniProt or InterPro

Protein Sequence (1179 amino acids)

>CA265_RS12990 chromosome segregation protein SMC (Pedobacter sp. GW460-11-11-14-LB5)
MQLTRLEIKGFKSFGDKVTINFNEGVTAIVGPNGCGKSNVIDAMRWVLGEQSTKALRSEK
MENIIFNGTKNRKQAQLAEVSLSFDNTKNILPTAYSQVTVTRKLYRNGDSEYRLNDVQCR
LKDITDLFLDTGIGSDSYSIIELKMVDEIITNKEHSRRSLFEEASGISKYKLRKRQTFSK
LKDTEADLERVEDLLFEIEKNLKTLENQARKAERYYKLKEQYRELSVQLATHRIAFFRTD
LNALETQEQNQQVNRTELSNKIDTGEAELQKLKLGSISQEKNLSVQQKATNEFVSKIRAY
ESEKKVKNEQMRFLQEKETRLSGELEKDKNQVNHIKYNIKRLNEEVLTETEVFNRLESDL
KLLKSTLDTLREQQQTEKNRIDNLIKSVNELQNNVYQSQKEIDILNIQKDALVQETNRNV
DDTETKTLELKAFDHALAELDIQVREKQANIKNLTEAEEILKEKLAASEINLSSNKEKLT
AENRKKDAKQNEYNLTKSLVDSLEGFPESIRFLKKNNAFAKSALLLSDILFCNEDYRIAI
ENYLEPVMNHYVVDQYADAVQAINLLTDASRGRANFFILENVPDKNPVIGTHEGLVSALS
VIEVDKKYQHLCNLLLQNVYIAVAEQENLFKVTPTESLTILAKNGKYAQTKFTLAGGSVG
LFEGKRIGRAKNLENLAKEIKASESLINQYNAAIKAETDQIFELKEASKINQINALQQEM
NRLNNEHISVQTRRDQYQEFITTSENRKTDIAQKIVSIEKALSEKLPALVQLQKDQQEAH
VNLQEQQLNYQEIADQVNESAGKYNQDNIRFHQQQNKLSGLEKDLDYRFVQEEALNKRIA
QNDKELQEALTQITATLQHTDLNDDTLLEMYQQREEMEKGLAEAEQAYFTSKGSINEVEN
DLTNIRKNREETDFLLTEIKDKKNALKIDLNALKERLAVEFNIDINDLLETDTEIEALES
EFDLRQKVERMKRQLDEFGAINSMAMEAFKEMEERYTFIQNQKKDLNAAKTDLLQTIKEI
DDTAKDKFMQAFTQAREHFIVVFRSLFNEEDSCDLILSDINNPLEADIDIIARPKGKRPL
SINQLSGGEKTLTATALLFSLYLLKPAPFCIFDEVDAPLDDTNIDKFNNIIRKFSDQSQF
IIVSHNKRTIASTDIIYGVTMVEQGVSRVVAVDLREVAA