Protein Info for CA265_RS12445 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 328 signal peptide" amino acids 1 to 38 (38 residues), see Phobius details PF00135: COesterase" amino acids 59 to 176 (118 residues), 33.6 bits, see alignment E=4.6e-12 PF20434: BD-FAE" amino acids 63 to 206 (144 residues), 61.7 bits, see alignment E=1.6e-20 PF07859: Abhydrolase_3" amino acids 78 to 181 (104 residues), 38.8 bits, see alignment E=1.9e-13 PF02230: Abhydrolase_2" amino acids 140 to 283 (144 residues), 24.8 bits, see alignment E=3.7e-09

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9Z612 at UniProt or InterPro

Protein Sequence (328 amino acids)

>CA265_RS12445 hypothetical protein (Pedobacter sp. GW460-11-11-14-LB5)
MAGSEPLPKKQMMPNNKVYPLSLLFLALLFSSVSAIAQIVLKDKKYRVDTKIFAQTDSAT
LKLDIYYSGKITETKPTVLFVFGGGFVMGRRDSKLFDQYFNTLLAKGFKVVSVDYRLGLK
GKKFPSPFNTSNLKAAIDTATTDVFDATAYLIRNAKELGIDTAMIILSGSSAGAITALHA
DYNKRNATALSVKLPPHFQYKGVISFAGAILSYHGAPKYVIPPAPTMFFHGTTDKLVPYN
KVRLLNRGFFGSKYLAHTFSKNGYPYYFQYVQGMGHEIAGTPMVENLPDILWFIENYILK
QKRYFMEVNFKDADKKPSFSIPPALKKR