Protein Info for CA265_RS12400 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 607 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details PF17291: M60-like_N" amino acids 71 to 146 (76 residues), 31.4 bits, see alignment E=2.4e-11 PF13402: Peptidase_M60" amino acids 161 to 424 (264 residues), 179.5 bits, see alignment E=1.5e-56 PF00754: F5_F8_type_C" amino acids 480 to 603 (124 residues), 56.5 bits, see alignment E=4.9e-19

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9Z5E1 at UniProt or InterPro

Protein Sequence (607 amino acids)

>CA265_RS12400 hypothetical protein (Pedobacter sp. GW460-11-11-14-LB5)
MKKKLLLLTVSAIVGLTACKKAAVLQDEVVNTKKTMSGVSVQSLTQTNVFNVTEKINASI
ERDRLKNGYYLTDFTATGLYMAPGATLDITVEQTAGTRLPKLLIGTYSRYGTWNTQPTVV
QLTAGTNTISNAVGGLLWIRYTNSTTGSTAKLTFNSGYTYAPYYKLGVTTNSDWINQLQT
YTTPDVVLEGTNCFIVVSRTKAIQYQAEDQSAILNKITQVIALEDDLNGLDNSLPAHAKN
VHTYLLTQHEDPAYYFFAYDYRTAYITSDVNAILTLSAVGTNGWGLWHELGHQHQMMWRW
GALGEVTVNLYSLYVQRTLTPSINRLVNDGVWPKAFTYLGKPAGTKDYNGSASYANPLTD
LFIRLCMFQQLTLAYGDNFYRTLAKNMRVENPTLANDDARLRYFMLKACSISGKNLSNFF
QKWGLNLSTPAATTQIYADMAALGLPAPSTDPSTLQDNVAPLTELSKTGWSINSFSSEET
SGEGAINGRAATLIDGSYSTFWHSRWTTSPTSYPHQVVIDLGSSKSANGLSLVQRSGLSR
AIKNFQVLTSTDNITFTSVNNYVAQNVAGAQYFAFGSTKTLRYLKVIATSAQDGLQFASL
AELGLYN