Protein Info for CA265_RS11590 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 902 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details PF07995: GSDH" amino acids 59 to 335 (277 residues), 122.7 bits, see alignment E=4.2e-39 PF00801: PKD" amino acids 507 to 561 (55 residues), 50.5 bits, see alignment 3.2e-17 PF18911: PKD_4" amino acids 514 to 570 (57 residues), 41.4 bits, see alignment 2.5e-14 PF00034: Cytochrom_C" amino acids 645 to 724 (80 residues), 33.2 bits, see alignment E=2.3e-11

Best Hits

KEGG orthology group: None (inferred from 72% identity to phe:Phep_2208)

Predicted SEED Role

"Cytochrome c551/c552" in subsystem Soluble cytochromes and functionally related electron carriers

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9Z4V1 at UniProt or InterPro

Protein Sequence (902 amino acids)

>CA265_RS11590 hypothetical protein (Pedobacter sp. GW460-11-11-14-LB5)
MKTTFTLLLSALAFVFISATTLNKNIYESKAFEFFTKSKIDTPDQDRFVKVTLAQGEFTE
PTEMTILPNLDILVAQRRGEVLIYKNQTKKIKEAGKLDVYFKTSVPDVNAEEGLLGMAAD
PKFAVNQYIYLFYSPFDKSVNRLSRFKLINDQIVKESEKIILEFYSQREICCHTGGSIAF
GSDNLLYVSTGDNSTPFDVPKQQYVNKGYAPLDNRKGLEQYDARRSAGNTNDLRGKILRI
KVNEDGTYSIPDGNLFSKNDPKARPEIYVMGNRNPYRISVDQKNNFLYWGEVGPDASNDD
ALRGPRGYDEVNQARKAGNFGWPLFVGNNYAYKAYDYTNGANGNAFDPESPINNSPNNTG
LEKLPAAQPAFIWYPYGASKEFPQVGAGGRTAMAGPVYYATANSPYPAYYNGKLIIYEWV
RGWVKAVTMNAQGDYLSMEPFMAKVSLAAPIDMELGPDGKIYVLEYGKGWFTKNPDAAIT
RIDYLKGNRPPTVEDLNIAKTSGLLPYKMTATVTAKDPDGDALTYIWNLGKGVTKTTTIP
TIQHTYTKAGEYPLSVTVMDKSKASAKSQVIPVFAGNEHPNVNIDLAGNKSFYFPNKPVD
YKVLVSDKGAKVNNSRIYISNTYTEGSDLAGAQLGHQQAAQTLVGKTIMLKSDCSTCHKE
AAVSIGPAFNKIAAKYKNDSKAVDYLASKVIAGSHGVWGEVPMPAHTTMKEAEVKKITEW
IMTLGNKEAVKASLPTSGKIVPPAATDKKKSVLTLKATYTDAGAAGLKPLTTTNLINLKS
SVIDADDIKDFGGFQRKDVFGGEKLVLTKDNGWLALKNIDLTGISGFGFSFLNLDPGADG
EIEIRLDDSKGIMIGKSTFRKSIPINMLSDGKFHSIYFVFKELKTSDKKNRPIIQSITVE
PK