Protein Info for CA265_RS11560 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: SusC/RagA family TonB-linked outer membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1028 signal peptide" amino acids 1 to 30 (30 residues), see Phobius details TIGR04056: TonB-linked outer membrane protein, SusC/RagA family" amino acids 40 to 1027 (988 residues), 932.7 bits, see alignment E=3.5e-284 PF13715: CarbopepD_reg_2" amino acids 41 to 123 (83 residues), 65.5 bits, see alignment E=5.5e-22 PF07715: Plug" amino acids 131 to 235 (105 residues), 77.7 bits, see alignment E=1.5e-25 TIGR04057: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region" amino acids 211 to 241 (31 residues), 60.6 bits, see alignment (E = 9.5e-21) PF00593: TonB_dep_Rec" amino acids 396 to 989 (594 residues), 71.5 bits, see alignment E=2e-23

Best Hits

KEGG orthology group: None (inferred from 63% identity to shg:Sph21_4760)

Predicted SEED Role

"TonB family protein / TonB-dependent receptor" in subsystem Iron acquisition in Vibrio or Ton and Tol transport systems

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9Z5U6 at UniProt or InterPro

Protein Sequence (1028 amino acids)

>CA265_RS11560 SusC/RagA family TonB-linked outer membrane protein (Pedobacter sp. GW460-11-11-14-LB5)
MSNFRLGIRQTCRILLPVLFLCSPLFSQAQNPSEPTINATLSGTVIDAKTKETLIGASVK
IQGTTNGSSTDREGKFRLITGQKFPFTLLVNFVGYKQTEVVVTQSQITVELVEDYNPLDD
VVVVGYGTQKKINLTGSLATVDAKTLANRPITNATQALQNVPGVFTNQTKGRPGADAATI
RIRGAGTLNNNNPLVLVDGVEFPLGDVNPNDIESVTVLKDAASAAIYGNRAANGVILVKT
KTGKKGTFSIDYNFYAGSQKATQFPDVVTNTVDYMIGKNRALANEGKPAESSDALINEFR
NGTDPFIYPNTNWFDIMFRNAAIQEHNLRISGGSEKTAFSISLGYLDQDGILIASSGKRY
SLNSNISSDITKNLKVGASLTANFWNSKESAYSADDGNGEGGLMGLTYRGLPFQTPYAQD
GTYADQWIRVPGHNFFRNTVALANEGFNKNNQYRTLANVFLEYQLPFNIRYKTTLGANLL
YGINKYSYPAINLTNPKTGVVTPIGNTPARGVRQISQNNINITNFHTLNWEGSLDKHHFG
ALAGFSLERFDDSNFSAYNEGYLGNDLTELNAGSTSPQVTGTSGASRLQSYFGRFNYNYN
EKYLFEANFRYDGSSRFAKDNRWGFFPSFSAGWRASEEDFIKNLNVFSNLKLRASYGKLG
NQNVPLFSYVDAIALGQNYNFNGTIVSGAAITQLSDPNITWETTTMSDIGLEGSFFKNKL
TFEVDFFDKQTSKILRQISVPGQVGNLAGPVKNIGAVNNRGFEITLGFKDSVKDFRYNID
ANLTYVKNKVTNVNGQKYYSGNTIIQEGSPIDSFFGLQAEGIFQSAEEVKAHAFQNAGTV
PGDLKYKDVDANGVIDNNDRVVIGNSIPKFVYGFSGGFGYKRWDFSFIFQGLQDVDTYLT
GNLAQPFKNGAGVTKDWLTDSWTPTNTGASLPRLTTSNGYPQNFQTSSFWVRDASYLRLK
NVQISYSFPNKWLNKAGIDVLKVFVNAQNYLTFSNFKFSDPERNLTRADLIEYPNAKTIS
AGINVSFK