Protein Info for CA265_RS10635 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: dipeptidase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 386 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details PF01244: Peptidase_M19" amino acids 24 to 382 (359 residues), 337.8 bits, see alignment E=3.3e-105

Best Hits

KEGG orthology group: K01273, membrane dipeptidase [EC: 3.4.13.19] (inferred from 55% identity to phe:Phep_2434)

Predicted SEED Role

"Microsomal dipeptidase (EC 3.4.13.19)" in subsystem Pyrroloquinoline Quinone biosynthesis (EC 3.4.13.19)

MetaCyc Pathways

Isozymes

No predicted isozymes

Use Curated BLAST to search for 3.4.13.19

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9Z4U0 at UniProt or InterPro

Protein Sequence (386 amino acids)

>CA265_RS10635 dipeptidase (Pedobacter sp. GW460-11-11-14-LB5)
MKSICLFLGLIVLQINLFAQSSKIHRDAIVVDTHGDILFNQIKSGIDIGKLQQKGNFDLV
RARQGGLDVQFFSIWCDETGGYAVANREIDSLYSLIKRYPDRIQLVTTARDLELAVNKQK
LAAMIGVEGGHMIENRLANIDSLAKRGMAYLTLTWNNSTSWSSSAAEESSGKVKPEQAGL
NNFGKQVVKRLNKLGVMVDLSHVGERTFYDAIKVSAKPVIVSHSCTYAINPVPRNLKDDQ
IKAVGKNGGVVCINFYSGFLDSTFNTKQKAFFAKYDGELKTLTAKYSRSNAIDTLIYNHQ
VDADATRPPISLLVKHINHVVKLIGIDHVGLGADFDGAESFPLGMNSVADYPKITEELIK
NGYSESDIRKIMGRNVVRLIRENKGR