Protein Info for CA265_RS10445 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: AI-2E family transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 374 transmembrane" amino acids 12 to 29 (18 residues), see Phobius details amino acids 33 to 51 (19 residues), see Phobius details amino acids 61 to 81 (21 residues), see Phobius details amino acids 139 to 167 (29 residues), see Phobius details amino acids 201 to 223 (23 residues), see Phobius details amino acids 229 to 256 (28 residues), see Phobius details amino acids 264 to 280 (17 residues), see Phobius details amino acids 300 to 329 (30 residues), see Phobius details PF01594: AI-2E_transport" amino acids 18 to 334 (317 residues), 181.3 bits, see alignment E=1.4e-57

Best Hits

KEGG orthology group: None (inferred from 78% identity to phe:Phep_2317)

Predicted SEED Role

"permease"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9Z4C9 at UniProt or InterPro

Protein Sequence (374 amino acids)

>CA265_RS10445 AI-2E family transporter (Pedobacter sp. GW460-11-11-14-LB5)
MTNNLPLTVKRSIELLGLMAIVAVMVIGRDIIMPMLMAFFISIMLLPVYRFLKRKRIPES
LAIILSILLVALFVALIVWFFSNQIGILVKDFPQIKSNVTQHINSLSDWISRITHYDDKQ
QKAFIQTKSDDLMNMGTSLAGGAAVTLSGIFVFIGLLPIYIYLMLFYKDILLRFIFMWFK
TDDHPKVKEAIYETESIIKSYLIGLLIQITYMTILLGGILMLIGIKHALLIGVIFAILNL
IPYVGALIGNLIGVLLTLTSSQELWPVITVLGVIAFVQFLDNNILMPRIVGSKVKINALF
AILGVFIGGSIAGVSGMFLALPIVAVLKIIFDRTESFKQWGVLLGDERPAKSPMTFPNFR
KKKPVATKTGIEKG