Protein Info for CA265_RS09955 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: response regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 120 PF00072: Response_reg" amino acids 5 to 114 (110 residues), 82.7 bits, see alignment E=1.1e-27

Best Hits

KEGG orthology group: None (inferred from 72% identity to phe:Phep_0793)

Predicted SEED Role

"Phosphate regulon transcriptional regulatory protein PhoB (SphR)" in subsystem High affinity phosphate transporter and control of PHO regulon or Phosphate metabolism

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9Z4V8 at UniProt or InterPro

Protein Sequence (120 amino acids)

>CA265_RS09955 response regulator (Pedobacter sp. GW460-11-11-14-LB5)
MKKCIYVVEDNPNIREIIEFLLIEELYEVKTCPNTNDFWLQMSKHLPDMVILDIMLPDGN
GLDICNTLKRNIKTHDIPVMMMSANNHLNAVKAKCDAEDFINKPFDLNDFVNRVDKYLLN