Protein Info for CA265_RS09590 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: LD-carboxypeptidase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

• PF02016: Peptidase_S66
  • amino acids 46 to 162 (117 residues), 130.1 bits, E=5e-42
• PF17676: Peptidase_S66C
  • amino acids 212 to 326 (115 residues), 113.4 bits, E=1e-36

Best Hits

KEGG orthology group: K01297, muramoyltetrapeptide carboxypeptidase [EC: 3.4.17.13] (inferred from 68% identity to phe:Phep_2200)

Predicted SEED Role

"Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13)" (EC 3.4.17.13)

MetaCyc Pathways

• muropeptide degradation (1/4 steps found)
• peptidoglycan recycling I (8/14 steps found)
• peptidoglycan recycling II (3/10 steps found)
• peptidoglycan maturation (meso-diaminopimelate containing) (4/12 steps found)

Isozymes

Compare fitness of predicted isozymes for: 3.4.17.13

Use Curated BLAST to search for 3.4.17.13

Sequence Analysis Tools

See A0A1X9Z3Z9 at UniProt or InterPro

Protein Sequence (340 amino acids)

>CA265_RS09590 LD-carboxypeptidase (Pedobacter sp. GW460-11-11-14-LB5)
MNRKHFLSSFIAATTVLPAFKTLANTIESESSSFKIPPHLKPGDCIGITSPAGYITQAQI
QPSVLQMQSWGFTIKVGNTIGKRNFTYGGTDEERLADFQQMLDDPTIKAIMCARGGYGFV
RIIDKLDFSSFKRNPKWIIGFSDITVLHCHLSRNYGIASIHAKMCNSFPDDWSKAEPIQI
ETILSIKNAIIGEQMGYIAPVNINNRLGKVDGVLVGGNLSIIETLAGSDSDLDTKGKILF
IEDTGEYLYSIDRMLWNLKRSGKLKNLKGLIVGGFKVKPDDEGEEFGKTIYDIVLEKVKE
YSYPVAFDFPVGHQRNNFALKCGVNHTFIVNETGSTLRSI